So far The Divide and Avalon #2 data pads are not counting when picked up during missions.
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Hello there, Thank you very much for reaching out to us. I'm sorry to hear that you are having issues with some of the data pads in the game. We've received reports of this issue and are investigating the underlying issue further. For any updates on this issue, we recommend viewing our [url=http://www.x.com/Destiny2Team]X/Twitter page[/url] and our Patch Notes as they become available, posted on the [url=https://www.bungie.net/7/en/News]News page[/url].