Did you have a Strand weapon equiped?
I'm still trying to figure out some odd behavior with my void build. There appears to be a strange synergy between certain artifact perks and some mods.
When I use a Strand heavy like Circular Logic I don't get any amor charges, too. But if I equip a Strand kinetic weapon like Perpetualis with the same build, armor charges don't decay anymore from weapon surge mods.
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I didn't check for that tbh. I just reset my artifact and that seemed to work. I definitely think it had something to do with volatile flow though.