You previously migrated your PS3 Destiny 1 save data to PS4 3 years ago.
Along with that, you have a deleted character that had 2 hours and 13 minutes on it.
Way back in the day, it seems you deleted the character and remade it.
Importing D1 PS3 to D1 on the PS4 only happens once; after you have PS4 save data, no further importing will occur, so you having played on the PS3 a bit recently would have had absolutely no impact on your PS4 save data that was created 3 years ago.
After you did the import those years ago, the two sets of save data (PS3 and PS4) were entirely separated and any progress or changes to one would not effect the other.
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The part here that's annoying, if I'm understanding you correctly, is that someone created an EXO on my account without my noticing at some point. Basically, you're telling me I need to restart, aren't you...
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Yes, you'll need to regain those levels again and play through that bit of story again on this character as your progress from your previous amount of playing on the other character will not carry over, and there's no way to make it carry over at this point, as you already performed the next gen import way back then.