1: After completing my warp drive mission, I disconnected, skipping the cut scene completely.
2: On my second run through the opening mission my jumpship cloned and clipped through itself as it detached from it's suspension cords. It continued to be in 2 places at once until the scene ended.
Hope this helps!
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The lighting/shadowing in the intro on present day Mars sends to flicker and change tones (orange then blue tones, then red). Not sure if this was intentional.