Honestly at this point I think Bungie's plan is to kill PvE and make it a pvp only game like Titanfall. There's no other reason that nerfs in one type of game should hit the other. This is another reason I say PvP should be totally separate from the game like every other game in the world that isn't a battle arena. That or Bungie's trying to break the game so Activision will replace them with a new studio.
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Then they will end up like Titanfall: forgotten. The lack of pve was why Titanfall had no longevity.